CoSMo 2012 - Revision history

Gunnar: /* Sensory-motor transformations */

2019-08-01T18:09:39Z

Sensory-motor transformations

← Older revision		Revision as of 18:09, 1 August 2019
Line 10:		Line 10:

	Lecturers: Gunnar Blohm, Philip Sabes		Lecturers: Gunnar Blohm, Philip Sabes
	~~<embed>Sensory-motor-Blohm-1.pdf</embed>~~
	[[Media:Sensory-motor-Blohm-1.pdf \| Blohm lecture 1]] <br>		[[Media:Sensory-motor-Blohm-1.pdf \| Blohm lecture 1]] <br>
	[[Media:Sensory-motor-Blohm-2.pdf \| Blohm lecture 2]]		[[Media:Sensory-motor-Blohm-2.pdf \| Blohm lecture 2]]

Gunnar: /* Sensory-motor transformations */

2019-08-01T18:08:44Z

Sensory-motor transformations

← Older revision		Revision as of 18:08, 1 August 2019
Line 10:		Line 10:

	Lecturers: Gunnar Blohm, Philip Sabes		Lecturers: Gunnar Blohm, Philip Sabes
			<embed>Sensory-motor-Blohm-1.pdf</embed>
	[[Media:Sensory-motor-Blohm-1.pdf \| Blohm lecture 1]] <br>		[[Media:Sensory-motor-Blohm-1.pdf \| Blohm lecture 1]] <br>
	[[Media:Sensory-motor-Blohm-2.pdf \| Blohm lecture 2]]		[[Media:Sensory-motor-Blohm-2.pdf \| Blohm lecture 2]]

Gunnar at 14:44, 6 February 2018

2018-02-06T14:44:12Z

← Older revision		Revision as of 14:44, 6 February 2018
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	Contact [[Ben Walker]] if you need assistance.		Contact [[Ben Walker]] if you need assistance.

	----		----

Gunnar at 14:43, 6 February 2018

2018-02-06T14:43:45Z

← Older revision		Revision as of 14:43, 6 February 2018
Line 4:		Line 4:

	Contact [[Ben Walker]] if you need assistance.		Contact [[Ben Walker]] if you need assistance.

			----

	== Sensory-motor transformations ==		== Sensory-motor transformations ==

Gunnar at 14:41, 6 February 2018

2018-02-06T14:41:44Z

Mike at 19:57, 5 February 2018

2018-02-05T19:57:38Z

← Older revision		Revision as of 19:57, 5 February 2018
Line 80:		Line 80:
	[[Media:Exptcode.zip \| Matlab code and other interesting stuff]],		[[Media:Exptcode.zip \| Matlab code and other interesting stuff]],
	[[Media: Stimuli1.zip \| Stimuli, part 1]]		[[Media: Stimuli1.zip \| Stimuli, part 1]]
	[[Media: Stimuli2.zip \| Stimuli, part 2]]. Note that the stimuli need to be in subdirectory "stimuli" (relative to the directory with the experimental code), and you will need the MGL toolbox for running psychophysical experiments: http://gru.~~brain~~.~~riken.jp~~/doku.php/mgl/~~download~~		[[Media: Stimuli2.zip \| Stimuli, part 2]]. Note that the stimuli need to be in subdirectory "stimuli" (relative to the directory with the experimental code), and you will need the MGL toolbox for running psychophysical experiments: http://gru.stanford.edu/doku.php/mgl/beta
	<br>You'll need to set the screen variable "scr" to 0 (to run in a window) or 1 (to run full-screen on your primary screen).		<br>You'll need to set the screen variable "scr" to 0 (to run in a window) or 1 (to run full-screen on your primary screen).
	<br>		<br>

Mike at 00:09, 31 January 2018

2018-01-31T00:09:49Z

← Older revision		Revision as of 00:09, 31 January 2018
Line 111:		Line 111:

	Advanced neural data analysis:<br>		Advanced neural data analysis:<br>
	[http://~~klab~~.~~smpp.northwestern.edu~~/wiki/images~~/d/de~~/DREAM_exercise.docx AnalysisFiles]		[http://compneurosci.com/wiki/images/DREAM_exercise.docx AnalysisFiles]

	A guide to [[Paper_Writing_101]]		A guide to [[Paper_Writing_101]]
Line 126:		Line 126:
	[[Media:Motor_primitives_-_simulink.zip \| Simulink files]]		[[Media:Motor_primitives_-_simulink.zip \| Simulink files]]

	[http://~~klab~~.~~smpp.northwestern.edu~~/wiki/images~~/2/20~~/CoSMo2012.MussaIvaldi.pdf Sandro's presentation]		[http://compneurosci.com/wiki/images/CoSMo2012.MussaIvaldi.pdf Sandro's presentation]

	[[Media:NeuromechanicsCosmo2012_Kutch.pdf‎ \| Jason's Presentation]]		[[Media:NeuromechanicsCosmo2012_Kutch.pdf‎ \| Jason's Presentation]]
Line 150:		Line 150:

	and here is the time chapter from a Book Konrad is co-writing with Weiji Ma and Dan Goldreich.		and here is the time chapter from a Book Konrad is co-writing with Weiji Ma and Dan Goldreich.
	[http://~~klab~~.~~smpp.northwestern.edu~~/wiki/images~~/c/ca~~/TimeChapterBook.pdf TimeChapter]		[http://compneurosci.com/wiki/images/TimeChapterBook.pdf TimeChapter]
	password is lowercase and describes the statistics that Konrad likes to do.		password is lowercase and describes the statistics that Konrad likes to do.

Mike at 00:06, 31 January 2018

2018-01-31T00:06:13Z

← Older revision		Revision as of 00:06, 31 January 2018
Line 108:		Line 108:

	'''Tutorial: Simple introduction to Bayesian approaches''' <br>		'''Tutorial: Simple introduction to Bayesian approaches''' <br>
	[http://~~klab~~.~~smpp.northwestern.edu~~/wiki/images~~/6/6c~~/School_Tutorial.zip TutorialFiles]		[http://compneurosci.com/wiki/images/School_Tutorial.zip TutorialFiles]

	Advanced neural data analysis:<br>		Advanced neural data analysis:<br>

Mike: 171 revisions imported

2018-01-23T17:39:32Z

171 revisions imported

New page

This page contains course materials for the [http://www.compneurosci.com/CoSMo2012/program.html CoSMo 2012] summer school.

To upload files, you must log in with an account that has upload access. Here are some [[upload instructions]] or you can go straight to the [[Special:Upload | upload file page]].

Contact [[Ben Walker]] if you need assistance.

== Sensory-motor transformations ==
''Aug 6-7 ''

Lecturers: Gunnar Blohm, Philip Sabes

[[Media:Sensory-motor-Blohm-1.pdf | Blohm lecture 1]] 
[[Media:Sensory-motor-Blohm-2.pdf | Blohm lecture 2]]

[[Media:2012-08-CoSoMo-1-NeuralCircuits-and-Behavior.pdf | Sabes Lecture 1]] 
[[Media:2012-08-CoSoMo-2-SensoryIntegration-and-Learning.pdf | Sabes Lecture 2]]

'''Afternoon Tutorial Session 1''' 
GradientDescent: View as [[Media:GradientDescent.txt | .txt file]] or download the [[Media:GradientDescent.m | .m file]] 
NNet_toolboxR2010: View as [[Media:NNet_toolboxR2010.txt | .txt file]] or download the [[Media:NNet_toolbox.m | .m file]] 
RFanalysis: View as [[Media:RFanalysis.txt | .txt file]] or download the [[Media:RFanalysis.m | .m file]]

'''Afternoon Tutorial Session 2''' 
[[Media:LQR and Kalman Filtering Tutorial.pdf | LQR and Kalman Filtering]] 
Download the solution .m file: [[Media:LQG_Solution.m | LQG_Solution.m]]

==Introduction to the data and model sharing initiative==
''Aug 7 (evening)''

Lecturer: Konrad Körding

The DREAM project should be on the USB drives of a few different students. If you haven't yet, find someone who has the data and get it from them. DREAM can also be downloaded piece-wise (data sets, models, tools, and documentation) from CRCNS: http://crcns.org/data-sets/movements/dream/downloading-dream. You will need to [https://crcns.org/join_form?came_from=http%3A//crcns.org/data-sets/movements/dream/downloading-dream create] an account on CRCNS to be able to download the project files.


:If you're familiar with svn and would like info/credentials for code in the repository, contact [[Ben Walker]]

'''Update:''' Here's the fixed version of [[Media:LoadDreamPaths.m | LoadDreamPaths.m]]. (The originally distributed version had Windows directory formatting using '/' and would not work for *nix. This script should work for all OSes.)

Here is a [[Media:DataSetDescriptions.txt| description of data sets]] currently in Dream. Dream is growing, but this list is accurate as of the time of the summer school.


==Cue combination ==
''Aug 8-9''

Lecturers: Mike Landy, Paul Schrater

[[Media:Cueint.pdf | Reading: introductory chapter on cue integration from Sensory Cue Integration]] 
[[Media:COSMOsyllabus.pdf | Entire syllabus and exercises]] 
[[Media:Cosmolecturesmsl-I-IV_1_22.pdf | Landy Lecture 1a]] 
[[Media:Cosmolecturesmsl-I-IV_23_38.pdf | Landy Lecture 1b]] 
[[Media:COSMOlecturesmsl-VIII.pdf | Landy Lecture 2]] 
[[Media:COSMOlecturesprs-motint.pdf |Schrater Lecture 1]] 
[[Media:Cosmo2schrater.pdf |Schrater Lecture 2]]

'''Afternoon Tutorial Session 1''' 
''Basic Bayes with Koerding and Wolpert''
[[Media:CueIntegrationTutorialKW.m‎ | Tutorial Matlabfile 1]] 
based on [[Media:Kording_Bayes_integrate_sensorimotor_learn_2004.pdf | Tutorial paper reference]] 
and needs the following data [[Media:KordingRed_2004.mat | DataSet ]] 
 
''Landy/Kojima experiment'':
[[Media:Exptcode.zip | Matlab code and other interesting stuff]],
[[Media: Stimuli1.zip | Stimuli, part 1]]
[[Media: Stimuli2.zip | Stimuli, part 2]]. Note that the stimuli need to be in subdirectory "stimuli" (relative to the directory with the experimental code), and you will need the MGL toolbox for running psychophysical experiments: http://gru.brain.riken.jp/doku.php/mgl/download
 You'll need to set the screen variable "scr" to 0 (to run in a window) or 1 (to run full-screen on your primary screen).
 
 
''Motion Integration Tutorial''
[[Media: MotionIntegrationTutorial2.zip | Matlab files to implement Weiss et al, 2002 ]]

'''Afternoon Problem Session 2''' 
Try to do 2 out of 3 problems. 
'''Problem 1: '''
[[Media:ExplainingAway.m | Download this file and simulate Size/Distance Explaining away from Battaglia et al, 2010]] 
'''Problem 2: '''
[[Media:KalmanSimulation.m | Simulate the Kalman filter model in Haith et. al, 2008]] The kalman filter has been implemented for you [[Media:Kalman_filter.m |the matlab filter code ]], and the simulation model is described in this paper [[Media:haith-NIPS2008.pdf |the paper ]]. You will need this as well [[Media:gaussian_prob.m |more matlab functions]] 
'''Problem 3:''' This problem explores the discovery of possible cues to facial attractiveness. Download the following files: [[Media:Faceimananalysis.mat| the data needed ]], [[Media:AttractProjectGoals.m | the instructions ]], and [[Media:faceimgui.m | a gui to view the faces and dimensions ]]

== Learning, adaptation and generalization ==
''Aug 10-11''

Lecturers: John Krakauer, David Ostry, Konrad Körding

[[Media:Ostry Lecture 1.pdf | Ostry Lecture 1]] 
[[Media:Ostry Lecture 2.pdf | Ostry Lecture 2]]

[[Media:NorthwesternKRAKAUER.pdf| Krakauer Part 1]] 
[[Media:NortwesternKRAKAUER_Part_2.pdf| Krakauer Part 2]]

'''Tutorial: Simple introduction to Bayesian approaches''' 
[http://klab.smpp.northwestern.edu/wiki/images/6/6c/School_Tutorial.zip TutorialFiles]

Advanced neural data analysis: 
[http://klab.smpp.northwestern.edu/wiki/images/d/de/DREAM_exercise.docx AnalysisFiles]

A guide to [[Paper_Writing_101]]

==Neuromechanics & spinal cord==
''Aug 13-14''

Lecturers: Sandro Mussa-Ivaldi, Jason Kutch

'''Tutorial: Motor Primitives''' 
by: Alejandro Melendez-Calderon, Ali Farshchian

[[Media:Motor primitives - presentation2.zip| Presentation]] 
[[Media:Motor_primitives_-_simulink.zip | Simulink files]]

[http://klab.smpp.northwestern.edu/wiki/images/2/20/CoSMo2012.MussaIvaldi.pdf Sandro's presentation]

[[Media:NeuromechanicsCosmo2012_Kutch.pdf‎ | Jason's Presentation]]

'''Tutorial: Day 2''' 
[[Media:DatabaserProjectCoSMo2012.zip | Databaser and redundancy analysis code]] 
[[Media:DatabaserProjectCoSMo2012 p2.zip | Databaser and redundancy analysis code part 2]]

==Robotics & brain-machine interfaces==
''Aug 15-16''

Lecturers: Brenna Argall, Byron Yu, Lee Miller

[[Media:20120815_cosmo.pdf | Yu Lecture 1]] 
[[Media:kf_notes.pdf | Yu Lecture 2]]

[[Media:12cosmo_argall.pdf| Argall Lecture]]

'''Tutorial''' 

[[Media:bmi_exercises.pdf | Brain-machine interface exercises]] 
[[Media:cosmo_robotics.zip | Robotics exercises]] 

and here is the time chapter from a Book Konrad is co-writing with Weiji Ma and Dan Goldreich.
[http://klab.smpp.northwestern.edu/wiki/images/c/ca/TimeChapterBook.pdf TimeChapter]
password is lowercase and describes the statistics that Konrad likes to do.

==Computational neuroimaging==
''Aug 17-18''

Lecturers: Rhodri Cusack, Alex Wade, Scott Grafton

[[Media:Cusack_cosmo_2012_part1.pdf|Cusack Lecture One]] 
Cusack Lecture Two: [[Media:Cusack cosmo 2012 part2 firsthalf.pdf|part 1]], [[Media:Cusack cosmo 2012 part2 secondhalf.pdf|part 2]]

[[Media:Grafton MRInetworks.pdf |Grafton MRI networks]] 
[[Media:Grafton MRIglm.pdf| Grafton MRI GLM]]

[[Media:wade_day1.pdf|Wade lecture - day 1]] 
[[Media:wade_day2.pdf|Wade lecture - day 2]]

'''Tutorial:'''

[[Media:Workshop.pptx | Workshop‎]]

==The secret of becoming a successful scientist==
''Aug 17 (evening)''

Lecturer: Luís Amaral

[[Media:Amaral_2012-Aug_17-NU_School.pptx |Powerpoint presentation]]

== Group Presentations ==
''Aug 16 - 17''

Students: Upload .ppt files and any other (.m, .mat, .zip, etc.) files you'd like to share. (Upload instructions at the top of the page.) Let others know about your work! Please include group member names on this wiki with the link.

'''Thursday night groups:'''

[[Media:Variability in Motor Learning.pdf|Variability in Motor Learning]] ([[Media:Effect of Baseline Variability in Motor Learning.pdf |Abstract]]) by ''Farnaz Abdollahi, Katie Bankieris, Keturah Bixby, Moria Fisher, Ryan Morehead'' *winner student presentation competition*

[[Media:MILADYfinal.pptx|Temporal influence on subject reaching strategies in Kording & Wolpert (2004)]] ([[Media:MILADYabstract.pdf‎|Abstract]]) by ''Matt Balcarras, Irene Tamagnone, Leonie Oostwoud Wijdenes, Andrew Brennan, Deborah Barany, Yashar Zeighami.''

[[Media:PredictingCognitiveFunction.zip‎|Predicting Cognitive Function in Older Adults]] by ''Niousha Bolandzadeh & Nicole Salowitz''

[[Media:ModelingSkilledHabitualLearning.rtf|Modeling Skilled Habitual Learning]] by ''Maria Bengtson and Joseph DeSouza''

'''Friday night groups:'''

[[Media:Kiwii_Slides_Compressed.pptx|Kiwii Platform: Using Kinect and Wii Board to Probe Visual and Postural Effects on Balance.]] ([[Media:Abstract_KiWiiPlatform.pdf|Abstract]]) by ''Kahori Kita, John Rocamora, Yoshiyuki Sato, Frank Schumann, Scott Yang''

[[Media:WiiGroup.zip|Using the Wii Remote to investigate model-based and model-free learning of visuo-motor rotations with the wrist]] by ''Alvin Chin, Kasey Hemington, Luca Lonini and Angelina Paolozza''

[[Media:Decoding Encoding in M1.docx|Comparison of Decoding and Encoding Methods for Motor Cortical Spiking Data]] by ''Mikael Lindahl, Alexander Rajan, Stefan Habenschuss, John Butcher, Naama Kadmon''

[[Media:Cieslak_Kluth_Stiels_Wood-deciding2012.pdf‎|Deciding when to cut your losses]] ([[Media:Cieslak_Kluth_Stiels_Wood-decision2012_abstract.pdf‎|Abstract]]) by ''Matt Cieslak, Tobias Kluth, Maren Stiels, Daniel Wood''

[[Media:M1 neurons.pdf | The relationship between activity of neurons recorded simultaneously in primary motor cortex.]] by ''Maxym Myroshnychenko, Joan Deffeyes, Azadeh Yazdan, Diana Mitchell''
([[Media:M1 neurons abstract.pdf|Abstract]])

[[Media:Fabbri_CoSMo_Project_Abstract.docx|Advanced fMRI analyses and Kalman filter application]] by ''Sara Fabbri, Heather McGregor, Simona Monaco, and Na Jin Seo''

Ben: /* Computational neuroimaging */

2012-08-24T02:41:27Z

Computational neuroimaging

New page

Welcome to CoSMo 2012!

To upload, you must first log in using the id/password combination of the name of the summer school (id) and the year (pw). Here are some [[upload instructions]] or you can go straight to the [[Special:Upload | upload file page]]. Anything uploaded will be viewable by the internet at large, so sensitive files should be uploaded in encrypted .zip files.

Email ben-walker@northwestern.edu if you need assistance.

== Sensory-motor transformations ==
''Aug 6-7 ''

Lecturers: Gunnar Blohm, Philip Sabes

[[Media:Sensory-motor-Blohm-1.pdf | Blohm lecture 1]] 
[[Media:Sensory-motor-Blohm-2.pdf | Blohm lecture 2]]

[[Media:2012-08-CoSoMo-1-NeuralCircuits-and-Behavior.pdf | Sabes Lecture 1]] 
[[Media:2012-08-CoSoMo-2-SensoryIntegration-and-Learning.pdf | Sabes Lecture 2]]

'''Afternoon Tutorial Session 1''' 
GradientDescent: View as [[Media:GradientDescent.txt | .txt file]] or download the [[Media:GradientDescent.m | .m file]] 
NNet_toolboxR2010: View as [[Media:NNet_toolboxR2010.txt | .txt file]] or download the [[Media:NNet_toolbox.m | .m file]] 
RFanalysis: View as [[Media:RFanalysis.txt | .txt file]] or download the [[Media:RFanalysis.m | .m file]]

'''Afternoon Tutorial Session 2''' 
[[Media:LQR and Kalman Filtering Tutorial.pdf | LQR and Kalman Filtering]] 
Download the solution .m file: [[Media:LQG_Solution.m | LQG_Solution.m]]

==Introduction to the data and model sharing initiative==
''Aug 7 (evening)''

Lecturer: Konrad Körding

The DREAM project should be on the USB drives of a few different students. If you haven't yet, find someone who has the data and get it from them. DREAM can also be downloaded piece-wise (data sets, models, tools, and documentation) from CRCNS: http://crcns.org/data-sets/movements/dream/downloading-dream. You will need to [https://crcns.org/join_form?came_from=http%3A//crcns.org/data-sets/movements/dream/downloading-dream create] an account on CRCNS to be able to download the project files.


:If you're familiar with svn and would like info/credentials for code in the repository, contact [[Ben Walker]]

'''Update:''' Here's the fixed version of [[Media:LoadDreamPaths.m | LoadDreamPaths.m]]. (The originally distributed version had Windows directory formatting using '/' and would not work for *nix. This script should work for all OSes.)

Description of data sets:
*Burns -- reaching with head tilt and left/right visual perturbations
*Fernandes -- reaching with uncertain and rotated midpoint feedback
*Kording -- reaching with uncertain midpoint feedback
*Mattar 07 -- generalizing from one, two or multi targets to another direction
*Mattar 10 -- reaching to a distance (short/long), generalizing to the other one (long/short)
*Ostry -- move in force field, get an estimation of where the hand is
*Scott -- monkey (no spike), center out: even and not evenly distributed targets, also a forward/back
*Stevenson -- center out, monkey with neural time stamps
*Vahdat -- movement in force field with FMRI scans pre/post learning
*Wei 08 -- visual perturbations, cursor shown only at target
*Wei 10 -- movement in differing force fields
*Young -- movement time stayed the same, but distance changed; fast, medium, slow reaches.

==Cue combination ==
''Aug 8-9''

Lecturers: Mike Landy, Paul Schrater

[[Media:Cueint.pdf | Reading: introductory chapter on cue integration from Sensory Cue Integration]] 
[[Media:COSMOsyllabus.pdf | Entire syllabus and exercises]] 
[[Media:Cosmolecturesmsl-I-IV_1_22.pdf | Landy Lecture 1a]] 
[[Media:Cosmolecturesmsl-I-IV_23_38.pdf | Landy Lecture 1b]] 
[[Media:COSMOlecturesmsl-VIII.pdf | Landy Lecture 2]] 
[[Media:COSMOlecturesprs-motint.pdf |Schrater Lecture 1]] 
[[Media:Cosmo2schrater.pdf |Schrater Lecture 2]]

'''Afternoon Tutorial Session 1''' 
''Basic Bayes with Koerding and Wolpert''
[[Media:CueIntegrationTutorialKW.m‎ | Tutorial Matlabfile 1]] 
based on [[Media:Kording_Bayes_integrate_sensorimotor_learn_2004.pdf | Tutorial paper reference]] 
and needs the following data [[Media:KordingRed_2004.mat | DataSet ]] 
 
''Landy/Kojima experiment'':
[[Media:Exptcode.zip | Matlab code and other interesting stuff]],
[[Media: Stimuli1.zip | Stimuli, part 1]]
[[Media: Stimuli2.zip | Stimuli, part 2]]. Note that the stimuli need to be in subdirectory "stimuli" (relative to the directory with the experimental code), and you will need the MGL toolbox for running psychophysical experiments: http://gru.brain.riken.jp/doku.php/mgl/download
 You'll need to set the screen variable "scr" to 0 (to run in a window) or 1 (to run full-screen on your primary screen).
 
 
''Motion Integration Tutorial''
[[Media: MotionIntegrationTutorial2.zip | Matlab files to implement Weiss et al, 2002 ]]

'''Afternoon Problem Session 2''' 
Try to do 2 out of 3 problems. 
'''Problem 1: '''
[[Media:ExplainingAway.m | Download this file and simulate Size/Distance Explaining away from Battaglia et al, 2010]] 
'''Problem 2: '''
[[Media:KalmanSimulation.m | Simulate the Kalman filter model in Haith et. al, 2008]] The kalman filter has been implemented for you [[Media:Kalman_filter.m |the matlab filter code ]], and the simulation model is described in this paper [[Media:haith-NIPS2008.pdf |the paper ]]. You will need this as well [[Media:gaussian_prob.m |more matlab functions]] 
'''Problem 3:''' This problem explores the discovery of possible cues to facial attractiveness. Download the following files: [[Media:Faceimananalysis.mat| the data needed ]], [[Media:AttractProjectGoals.m | the instructions ]], and [[Media:faceimgui.m | a gui to view the faces and dimensions ]]

== Learning, adaptation and generalization ==
''Aug 10-11''

Lecturers: John Krakauer, David Ostry, Konrad Körding

[[Media:Ostry Lecture 1.pdf | Ostry Lecture 1]] 
[[Media:Ostry Lecture 2.pdf | Ostry Lecture 2]]

[[Media:NorthwesternKRAKAUER.pdf| Krakauer Part 1]] 
[[Media:NortwesternKRAKAUER_Part_2.pdf| Krakauer Part 2]]

'''Tutorial: Simple introduction to Bayesian approaches''' 
[http://klab.smpp.northwestern.edu/wiki/images/6/6c/School_Tutorial.zip TutorialFiles]

Advanced neural data analysis: 
[http://klab.smpp.northwestern.edu/wiki/images/d/de/DREAM_exercise.docx AnalysisFiles]

A guide to [[Paper_Writing_101]]

==Neuromechanics & spinal cord==
''Aug 13-14''

Lecturers: Sandro Mussa-Ivaldi, Jason Kutch

'''Tutorial: Motor Primitives''' 
by: Alejandro Melendez-Calderon, Ali Farshchian

[[Media:Motor primitives - presentation2.zip| Presentation]] 
[[Media:Motor_primitives_-_simulink.zip | Simulink files]]

[http://klab.smpp.northwestern.edu/wiki/images/2/20/CoSMo2012.MussaIvaldi.pdf Sandro's presentation]

[[Media:NeuromechanicsCosmo2012_Kutch.pdf‎ | Jason's Presentation]]

'''Tutorial: Day 2''' 
[[Media:DatabaserProjectCoSMo2012.zip | Databaser and redundancy analysis code]] 
[[Media:DatabaserProjectCoSMo2012 p2.zip | Databaser and redundancy analysis code part 2]]

==Robotics & brain-machine interfaces==
''Aug 15-16''

Lecturers: Brenna Argall, Byron Yu, Lee Miller

[[Media:20120815_cosmo.pdf | Yu Lecture 1]] 
[[Media:kf_notes.pdf | Yu Lecture 2]]

'''Tutorial''' 

[[Media:bmi_exercises.pdf | Brain-machine interface exercises]] 
[[Media:cosmo_robotics.zip | Robotics exercises]] 

and here is the time chapter from a Book Konrad is co-writing with Weiji Ma and Dan Goldreich.
[http://klab.smpp.northwestern.edu/wiki/images/c/ca/TimeChapterBook.pdf TimeChapter]
password is lowercase and describes the statistics that Konrad likes to do.

==Computational neuroimaging==
''Aug 17-18''

Lecturers: Rhodri Cusack, Alex Wade, Scott Grafton

[[Media:Cusack_cosmo_2012_part1.pdf|Cusack Lecture One]] 
Cusack Lecture Two: [[Media:Cusack cosmo 2012 part2 firsthalf.pdf|part 1]], [[Media:Cusack cosmo 2012 part2 secondhalf.pdf|part 2]]

[[Media:Grafton MRInetworks.pdf |Grafton MRI networks]] 
[[Media:Grafton MRIglm.pdf| Grafton MRI GLM]]

[[Media:wade_day1.pdf|Wade lecture - day 1]] 
[[Media:wade_day2.pdf|Wade lecture - day 2]]

'''Tutorial:'''

[[Media:Workshop.pptx | Workshop‎]]

==The secret of becoming a successful scientist==
''Aug 17 (evening)''

Lecturer: Luís Amaral

[[Media:Amaral_2012-Aug_17-NU_School.pptx |Powerpoint presentation]]

== Group Presentations ==
''Aug 16 - 17''

Students: Upload .ppt files and any other (.m, .mat, .zip, etc.) files you'd like to share. (Upload instructions at the top of the page.) Let others know about your work! Please include group member names on this wiki with the link.

'''Thursday night groups:'''

[[Media:Variability in Motor Learning.pdf|Variability in Motor Learning]] ([[Media:Effect of Baseline Variability in Motor Learning.pdf |Abstract]]) by ''Farnaz Abdollahi, Katie Bankieris, Keturah Bixby, Moria Fisher, Ryan Morehead''

[[Media: MILADYfinal.pptx|Temporal influence on subject reaching strategies in Kording & Wolpert (2004)]] ([[Media:MILADYabstract.pdf‎|Abstract]]) by ''Matt Balcarras, Irene Tamagnone, Leonie Oostwoud Wijdenes, Andrew Brennan, Deborah Barany, Yashar Zeighami.''

[[Media:PredictingCognitiveFunction.zip‎|Predicting Cognitive Function in Older Adults]] by ''Niousha Bolandzadeh & Nicole Salowitz''

[[Media:ModelingSkilledHabitualLearning.rtf‎|Modeling Skilled Habitual Learning]] by ''Maria Bengtson and Joseph DeSouza''

'''Friday night groups:'''

[[Media:Kiwii_Slides_Compressed.pptx|Kiwii Platform: Using Kinect and Wii Board to Probe Visual and Postural Effects on Balance.]] ([[Media:Abstract_KiWiiPlatform.pdf|Abstract]]) by ''Kahori Kita, John Rocamora, Yoshiyuki Sato, Frank Schumann, Scott Yang''

[[Using the Wii Remote to investigate model-based and model-free learning of visuo-motor rotations with the wrist]] by ''Alvin Chin, Kasey Hemington, Luca Lonini and Angelina Paolozza''

[[Media:Decoding Encoding in M1.docx|Comparison of Decoding and Encoding Methods for Motor Cortical Spiking Data]] by ''Mikael Lindahl, Alexander Rajan, Stefan Habenschuss, John Butcher, Naama Kadmon''

[[Media:Cieslak_Kluth_Stiels_Wood-deciding2012.pdf‎|Deciding when to cut your losses]] ([[Media:Cieslak_Kluth_Stiels_Wood-decision2012_abstract.pdf‎|Abstract]]) by ''Matt Cieslak, Tobias Kluth, Maren Stiels, Daniel Wood''

[[Media:M1 neurons.pdf | The relationship between activity of neurons recorded simultaneously in primary motor cortex.]] by ''Maxym Myroshnychenko, Joan Deffeyes, Azadeh Yazdan, Diana Mitchell''
([[Media:M1 neurons abstract.pdf|Abstract]])

[[Media:Fabbri_CoSMo_Project_Abstract.docx|Advanced fMRI analyses and Kalman filter application]] by ''Sara Fabbri, Heather McGregor, Simona Monaco, and Na Jin Seo''

← Older revision		Revision as of 14:41, 6 February 2018
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	[[Media:LQR and Kalman Filtering Tutorial.pdf \| LQR and Kalman Filtering]] <br>		[[Media:LQR and Kalman Filtering Tutorial.pdf \| LQR and Kalman Filtering]] <br>
	Download the solution .m file: [[Media:LQG_Solution.m \| LQG_Solution.m]]		Download the solution .m file: [[Media:LQG_Solution.m \| LQG_Solution.m]]

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	==Introduction to the data and model sharing initiative==		==Introduction to the data and model sharing initiative==
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	*Young -- movement time stayed the same, but distance changed; fast, medium, slow reaches.		*Young -- movement time stayed the same, but distance changed; fast, medium, slow reaches.
	-->		-->

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	==Cue combination ==		==Cue combination ==
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	[[Media:KalmanSimulation.m \| Simulate the Kalman filter model in Haith et. al, 2008]] The kalman filter has been implemented for you [[Media:Kalman_filter.m \|the matlab filter code ]], and the simulation model is described in this paper [[Media:haith-NIPS2008.pdf \|the paper ]]. You will need this as well [[Media:gaussian_prob.m \|more matlab functions]]<br><br>		[[Media:KalmanSimulation.m \| Simulate the Kalman filter model in Haith et. al, 2008]] The kalman filter has been implemented for you [[Media:Kalman_filter.m \|the matlab filter code ]], and the simulation model is described in this paper [[Media:haith-NIPS2008.pdf \|the paper ]]. You will need this as well [[Media:gaussian_prob.m \|more matlab functions]]<br><br>
	'''Problem 3:''' This problem explores the discovery of possible cues to facial attractiveness. <br> Download the following files: [[Media:Faceimananalysis.mat\| the data needed ]], [[Media:AttractProjectGoals.m \| the instructions ]], and [[Media:faceimgui.m \| a gui to view the faces and dimensions ]]		'''Problem 3:''' This problem explores the discovery of possible cues to facial attractiveness. <br> Download the following files: [[Media:Faceimananalysis.mat\| the data needed ]], [[Media:AttractProjectGoals.m \| the instructions ]], and [[Media:faceimgui.m \| a gui to view the faces and dimensions ]]

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	== Learning, adaptation and generalization ==		== Learning, adaptation and generalization ==
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	A guide to [[Paper_Writing_101]]		A guide to [[Paper_Writing_101]]

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	==Neuromechanics & spinal cord==		==Neuromechanics & spinal cord==
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	[[Media:DatabaserProjectCoSMo2012.zip \| Databaser and redundancy analysis code]] <br>		[[Media:DatabaserProjectCoSMo2012.zip \| Databaser and redundancy analysis code]] <br>
	[[Media:DatabaserProjectCoSMo2012 p2.zip \| Databaser and redundancy analysis code part 2]]		[[Media:DatabaserProjectCoSMo2012 p2.zip \| Databaser and redundancy analysis code part 2]]

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	==Robotics & brain-machine interfaces==		==Robotics & brain-machine interfaces==
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	[http://compneurosci.com/wiki/images/TimeChapterBook.pdf TimeChapter]		[http://compneurosci.com/wiki/images/TimeChapterBook.pdf TimeChapter]
	password is lowercase and describes the statistics that Konrad likes to do.		password is lowercase and describes the statistics that Konrad likes to do.

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	==Computational neuroimaging==		==Computational neuroimaging==
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	[[Media:Workshop.pptx \| Workshop‎]]		[[Media:Workshop.pptx \| Workshop‎]]

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	==The secret of becoming a successful scientist==		==The secret of becoming a successful scientist==
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	[[Media:Amaral_2012-Aug_17-NU_School.pptx \|Powerpoint presentation]]		[[Media:Amaral_2012-Aug_17-NU_School.pptx \|Powerpoint presentation]]

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	== Group Presentations ==		== Group Presentations ==