Software
General
- Total Commander (free) - file manager
- WinSCP (free) - file transfer tool
- TeXnicCenter (free) - LateX editor
- Mendeley reference manager (free) - manage references & automatic bibliography generator for MSWord, LibreOffice and BibTeX
- SeaMonkey (free) - internet application suite including web editor
- Git (free) - version control software and Dmytro's tutorial
Imaging Analysis
- SPM (free) - general purpose (fMRI oriented)
- PDC (free) - partially directed coherence analysis
- FieldTrip (free) - general purpose (EEG/MEG oriented)
- Brainwave (free) and documentation - MEG analysis toolbox
- CARET (free) - anatomical reconstruction toolkit for structural and anatomical data (simple tutorial)
- Atlas for identifying brain regions / function based on fMRI meta-analyses
Machine Learning
- Kevin Murphy's Kalman filter toolbox (free)
- libSVM - Support Vector Machine Library
- Andrew Ng's ML Programming Exercises
Vector Graphics
Statistics
- SPSS - general purpose
- R (free) - general purpose with great online book!
- psignifit (free) - psychometric function fitting
